Original title: Adaptive Regularized Tri-Factor Non-Negative Matrix Factorization for Cell Type Deconvolution Authors: Tianyi Liu,Quefeng Li,Xiaojing Zheng,Fei Zou In this article, the authors discuss the importance of accurately identifying different cell types from bulk gene…
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Original title: uniLIVER: a Human Liver Cell Atlas for Data-Driven Cellular State Mapping Authors: Yanhong Wu,Yuhan Fan,Yuxin Miao,Yuman Li,Zeyu Chen,Guifang Du,Jinmei Diao,Yu-Ann Chen,Mingli Ye,Renke You,Amin Chen,Yixin Chen,Wenrui Li,Wenbo Guo,Jiahong Dong,Xuegong Zhang,Yunfang Wang,Jin Gu In this…
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Original title: ganon2: up-to-date and scalable metagenomics analysis Authors: Vitor C. Piro,Knut Reinert In this article, the authors discuss the challenges associated with the fast growth of public repositories of DNA sequences and their impact…
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Original title: Hypothesizing mechanistic links between microbes and disease using knowledge graphs Authors: Brook Santangelo,Michael Bada,Lawrence Hunter,Catherine Lozupone This article explores the potential of knowledge graphs in understanding the relationship between the gut microbiome and…
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Original title: Reference-guided automatic assembly of genomic tandem repeats with only HiFi and Hi-C data enables population-level analysis Authors: Huaming Wen,Weihua Pan In this article, the researchers address the limitations of current methods for complete…
Original title: Democratizing computational pathology: optimized Whole Slide Image representations for The Cancer Genome Atlas Authors: Tristan Lazard,marvin Lerousseau,Sophie Gardrat,Anne Vincent-Salomon,Marc-Henri Stern,Manuel Rodrigues,Etienne Decenciere,Thomas Walter In this article, the authors discuss the potential of using…
Original title: Kinetics-based Inference of Environment-Dependent Microbial Interactions and Their Dynamic Variation Authors: Hyun-Seob Song,Na-Rae Lee,Aimee K. Kessell,Hugh C. McCullough,Seo-Young Park,Kang Zhou,Dong-Yup Lee In this article, the authors address the need for a better understanding…
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Original title: Benchmarking computational methods to identify spatially variable genes and peaks Authors: Zhijian Li,Zain M.Patel,Dongyuan Song,Guanao Yan,Jingyi Jessica Li,Luca Pinello This article explores the field of spatially resolved transcriptomics, which allows scientists to examine…
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Original title: PVTAD: ALZHEIMERS DISEASE DIAGNOSIS USING PYRAMID VISION TRANSFORMER APPLIED TO WHITE MATTER OF T1-WEIGHTED STRUCTURAL MRI DATA Authors: Maryam Akhavan Aghdam,Serdar Bozdag,Fahad Saeed In this article, researchers discuss the importance of timely diagnosis…
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Original title: Integration of multi-source gene interaction networks and omics data with graph attention networks to identify novel disease genes Authors: Kaiyuan Yang,Jiabei Cheng,Shenghao Cao,Xiaoyong Pan,Hong-bin Shen,Cheng Jin,Ye Yuan In this article, the authors discuss…
